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Database of Copper-Chelating Proteins

 
   
 

The Database of Copper-Chelating Proteins (DCCP) is maintained by Shandong Provincial Research Center for Bioinformatic Engineering and Technique. DCCP currently contains two types of proteins, one with 3D structure, called DCCP_3D, which contains 500 entries of proteins, and the other without 3D structure, called DCCP_1D, which contains 5088 entries.


The roles of copper The roles of copper-chelating proteins Related Softwares

Copper ions can donate or accept electrons and thus, function as catalysts in a number of metalloenzymes involved in a variety of biochemical processes, such as cellular respiration, iron homeostasis and antioxidant defense. Although copper ions are essential for many cellular processes, excessive free copper ions in the cytoplasm are highly toxic. When the intracellular free copper ion reaches a high level, it will compete with other metal ions for important biological ligands or active sites of enzymes. Furthermore, excessive free copper will generate reactive oxygen species that degrade DNA, proteins and lipids. Consequently, both deficiency and excess of copper ions are disadvantageous, which will result in fatal neurodegenerative diseases, such as Wilson and Menkes disease, Parkinson disease, Alzheimer's diseases and prion diseases.

As for the toxic effects of free copper ions in the cytoplasm, organisms need some strategies to balance the concentration of copper ions. On the other hand, due to the hydrophilic property of metal ions, copper ions cannot permeate through the biomembranes without carriers. To fulfill the task, many copper-chelating proteins came into being within the millions of years' evolution, which can specially bind copper ions, assist it to traverse the membrane and hand it to the copper-dependent proteins, finally complete the compartmentalization of copper ions and maintain the homeostasis of the metal.

Weblab Viewer Pro
WebLab is a stand-alone piece of software which is very nice for visualizing not only files in molecular simulation old *.msi format, but also in a variety of other formats such as *.pdb, *.xyz, etc. It is very nice for display of a number of simple X-ray crystal structures.
Cn3D
Cn3D (Read as See in 3D) is a superb new free viewer from the NCBI. It provides a more informative first image of a structure.
RasWin
RasMol is also a molecular visualizer.
 
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DNA Data Bank of Japan
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The Institute for Genomic Research
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PDBsum
The PDBsum database contains summary information and derived data on entries in the PDB
CBI
The Center of BioInformatics
 
 
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